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GitHub
AI Infra·2010
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NumPy

NumPy·NumFOCUS

The N-dimensional array (ndarray) underpinning Python's scientific stack — pandas, scikit-learn, and SciPy build directly on it. Vectorized math, broadcasting, and a C/Fortran bridge move numeric work out of Python loops into compiled code.

#ai-library#ai-framework#engineering#science#github+1
GitHub
AI Others·2013
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pgmpy

Ankur Ankan, Johannes Textor +1

Provides APIs to build, learn, and run Bayesian and dynamic Bayesian networks, perform probabilistic inference, and compute interventional/counterfactual queries. Ships example notebooks, tutorials, and PyPI/conda packages. ([github.com](https://github.com/pgmpy/pgmpy))

#python#github#ai-library#ai-tools#ai-framework+1
Machine Learning Foundation Papers·2014

Quantifying the Rise and Fall of Complexity in Closed Systems: The Coffee Automaton

Scott Aaronson, Sean M. Carroll +1·MIT, Caltech

Measures why complexity in closed systems rises then falls while entropy only climbs, using a coffee-and-cream cellular automaton. The key result: only interacting particles produce a transient complexity peak; non-interacting ones never do.

#foundation#30u30#paper#physics#science
Machine Learning Foundation Papers·2017

Neural Message Passing for Quantum Chemistry

Justin Gilmer, Samuel S. Schoenholz +3·Google Brain, Google +1

Recasts a scatter of competing graph-network designs as one message-passing recipe — propagate, aggregate, read out — then proves it on QM9, hitting chemical accuracy on most molecular property targets without hand-built descriptors.

#foundation#30u30#paper#science#chemistry
GitHub
AI Train·2023
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NVIDIA PhysicsNeMo

NVIDIA

Modular PyTorch-based framework for building, training, and deploying physics-informed ML models (neural operators, PINNs, GNNs, diffusion). Provides GPU‑optimized training, domain-specific datapipes for meshes/point clouds, distributed scaling and a model zoo.

#nvidia#physics#pytorch#ai-framework#ai-train+6
GitHub
AI Train·2024
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Boltz

Saro Passaro, Gabriele Corso +10·MIT Jameel Clinic, Recursion

Predicts 3D structures of proteins, nucleic acids, and small-molecule complexes, the first fully open-source model to approach AlphaFold3 accuracy. Boltz-2 adds binding-affinity prediction that nears FEP simulation accuracy at ~1000x the speed.

#foundation-model#github#science#ai-train#ai-inference+1
GitHub
AI Agent·2025
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Scientific Agent Skills

K-Dense Inc.

Provides 134 ready-to-use Agent Skills that let AI agents execute multi-step scientific workflows (bioinformatics, cheminformatics, imaging, clinical research). Each skill includes curated docs and examples plus unified access to 100+ scientific databases and common Python packages — for agents that support the Agent Skills standard.

#agent-skills#ai-agent#github#python#ai-workflow+4
GitHub
AI Agent·2025
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Claude Scientific Skills

K-Dense-AI·K-Dense AI

A library of ~140 ready-to-use Agent Skills that turn a coding agent (Claude Code, Cursor, Codex) into a science assistant across biology, chemistry, medicine, and drug discovery, with connectors to 100+ scientific databases and Python analysis tools.

#claude#claude-code#agent-skills#github#ai-tools+6
Hugging Face
AI Dataset·2026
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MR-RATE

Forithmus

Paired brain MRI scans and radiology text annotations for multimodal vision–language research. Provides image-level labels and image–text pairs suited for VQA, classification, and image-to-text tasks; CC BY-NC-SA 4.0 and ~10K–100K samples — research/non-commercial use.

#huggingface#multimodal#vision#image#ai-image+2
Hugging Face
AI Dataset·2026
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OpenMementos-228K

Microsoft

A 228,557-example dataset of reasoning traces segmented into blocks with iterative, compressed "memento" summaries so LLMs can learn to manage long context. Includes a training-ready subset and a `full` subset with sentence/block-level annotations for research and SFT.

#microsoft#huggingface#llm#nlp#math+4
Hugging Face
AI Dataset·2026
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KIMI-K2.5-1000000x

ianncity

Provides 1,000,000 model-generated chain-of-thought traces and instruction–response pairs for fine-tuning and distilled supervision. Focused splits (coding, PHD-Science, General-Math, MultilingualSTEM), ~5B tokens, Apache-2.0 license.

#huggingface#llm#ai-train#ai-coding#math+2
Hugging Face
AI Dataset·2026
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GLM-5.1-1000000x

Kassadin88

Provides 1,003,589 full chain-of-thought reasoning traces and final answers generated by GLM-5.1, split into main/Math/PHD-Science/Multilingual-STEM subsets. Useful for instruction-tuning, supervised fine-tuning, and reasoning experiments; released under Apache-2.0.

#huggingface#llm#nlp#math#science+1
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