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Machine Learning Foundation Papers·2017

Neural Message Passing for Quantum Chemistry

Justin Gilmer, Samuel S. Schoenholz +3·Google Brain, Google +1

Recasts a scatter of competing graph-network designs as one message-passing recipe — propagate, aggregate, read out — then proves it on QM9, hitting chemical accuracy on most molecular property targets without hand-built descriptors.

#foundation#30u30#paper#science#chemistry
GitHub
AI Train·2024
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Boltz

Saro Passaro, Gabriele Corso +10·MIT Jameel Clinic, Recursion

Predicts 3D structures of proteins, nucleic acids, and small-molecule complexes, the first fully open-source model to approach AlphaFold3 accuracy. Boltz-2 adds binding-affinity prediction that nears FEP simulation accuracy at ~1000x the speed.

#foundation-model#github#science#ai-train#ai-inference+1
GitHub
AI Agent·2025
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Scientific Agent Skills

K-Dense Inc.

Provides 134 ready-to-use Agent Skills that let AI agents execute multi-step scientific workflows (bioinformatics, cheminformatics, imaging, clinical research). Each skill includes curated docs and examples plus unified access to 100+ scientific databases and common Python packages — for agents that support the Agent Skills standard.

#agent-skills#ai-agent#github#python#ai-workflow+4
GitHub
AI Agent·2025
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Claude Scientific Skills

K-Dense-AI·K-Dense AI

A library of ~140 ready-to-use Agent Skills that turn a coding agent (Claude Code, Cursor, Codex) into a science assistant across biology, chemistry, medicine, and drug discovery, with connectors to 100+ scientific databases and Python analysis tools.

#claude#claude-code#agent-skills#github#ai-tools+6
Hugging Face
AI Dataset·2026
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MolDeTox

MolDeTox

Benchmarks LLM and VLM capabilities for toxicity-aware molecular editing using toxicity‑cliff molecule pairs. It provides QA-formatted tasks and CSV splits for fragment identification, non-toxic fragment generation, and detoxified molecule generation—useful for safety evaluation and drug-discovery research.

#huggingface#drug-discovery#chemistry#LLM#vllm
Hugging Face
AI Dataset·2026
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Open-MM-RL

Shukla, Chinmayee, Patil, Saurabh +21

Multimodal STEM problem set for verifiable, answer-supervised training and RL: contains single-image, multi-panel, and multi-image PhD-level questions across physics, math, chemistry and biology. Each example has a deterministic ground-truth answer, enabling reward modeling and automated evaluation.

#multimodal#RL#science#physics#math+5
Hugging Face
AI Model·2026
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Intern-S2-Preview

internlm

Multimodal 35B scientific foundation model for image+text-to-text reasoning and conversational workflows. Uses task-scaling and full-chain training (pretraining → RL) to boost domain scientific abilities while keeping general multimodal reasoning and agent skills.

#transformers#multimodal#foundation-model#huggingface#llm+4
Hugging Face
AI Dataset·2026
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Emerald Bay

Tahoe Therapeutics, tahoebio +1

Provides per-cell transcriptomes and five-day drug-sensitivity readouts for 1.83M single cells across 52 cancer cell lines and 91 drug conditions, with raw counts plus gene, cell-line, drug, and summary metadata for modeling drug response and context-dependent gene function.

#biology#genomics#drug-discovery#chemistry#huggingface+2
Machine Learning Foundation Papers·2026
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Accurate, Interdisciplinary and Transparent Structure-property Understanding with Deep Native Structural Reasoning

Chen Tang, Yizhou Wang +27

Performs native structural reasoning for proteins, small molecules and inorganic crystals by tokenizing coordinates, topologies and periodic connectivities into a unified structure-aware vocabulary. Treats structural tokens as addressable evidence to produce interpretable prediction traces and improves accuracy across biology, chemistry and materials benchmarks.

#foundation-model#multimodal#chemistry#biology#science+6
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